PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_3465_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 732aa    MW: 81226.1 Da    PI: 5.4324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_3465_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07669723146
                                          TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                          r rWT+ E e+l+++vk++  +      Wk+I +       kgRt  ++k++w++
  cra_locus_3465_iso_7_len_3028_ver_3 669 RHRWTEAEVEKLKEGVKKFSAEeslsiPWKAIFEFGAdvfqKGRTSVDLKDKWRN 723
                                          569*****************************655446666*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.6E-5429470IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.04E-5430470IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500907.004664725IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-10665730IPR009057Homeodomain-like
SuperFamilySSF466891.22E-9666726IPR009057Homeodomain-like
SMARTSM007177.5E-5668727IPR001005SANT/Myb domain
CDDcd116604.10E-12670726No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAIEALATCK QLKISKLLDL VRSAPELSDD IGKNARELVS FRIQTLFAPG SQNDNADTSA  60
LCQKDEFDPA NSCEDVLCHI LQKVSDIKSQ TGAPEMLKWD GQXPLLPIKE TPCNVALQKV  120
XQDCLNSDIN VLFGKMFSLV LQSLVLRISD EELKDAMFEG SHSVFLSLKE RSGLVGRAHC  180
DDKIPGDVDN SNGPVQEFEG RIKDVQVVLP NQVVSPSTSK NGVDVSQERV PDRNSPPSKR  240
NRTDSNGGKP ERDTHKDQIM QEDCYDPCAE TAKKFKPDVH ITECAAVEKL RTSAKDGPLA  300
NSSERIAEHI DKKRCNLENE AEIGGMAMEY IGTHDAGNQH AAKKFKQGVN IAALARVVKS  360
IASTGDLLLT DFDFDNDGAN PFAATDGDEY HDERNDIGSK KKLSLALSAD TMKIPWKHNK  420
LYVXSAIVAG NFLFCSSNTC PXVVHESCLG SAAKFDGDGK FNCSFCAYSR ALSEYLEVKT  480
KASLARKDLS TFIGLKVGNQ PKLSMRSRKS KQNPVTGIDE LNENHEENVD GDSLNKADHT  540
YRRTNVEDRL QAEPSISYVG NGPPCSEKVL YLTHGELNAL ENENVEGEGR EQERQSPIQP  600
EEQQIVIFQK SDGDISSPKQ ADIDYGNGGQ ALIIRQNDEE SSGLKYSMRP RTDNEKCTYP  660
AIPQLRRKRH RWTEAEVEKL KEGVKKFSAE ESLSIPWKAI FEFGADVFQK GRTSVDLKDK  720
WRNICKMDQK SE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA340689